BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB002H11LP1|AL425042
(594 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig157 1110 0.0
>3x_Contig157
Length = 1494
Score = 1110 bits (550), Expect = 0.0
Identities = 574/592 (96%)
Strand = Plus / Minus
Query: 1 aaaataatattttaatkagcagttaatacttctttctcttacaagttctcagaagctgtc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1097 aaaataatattttaatgagcagttaatacttctttctcttacaagttctcagaagctgtc 1038
Query: 61 aatatttttattgttgtkaacacacccagttaatcacattatccaatcccttatcttagc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 aatatttttattgttgtgaacacacccagttaatcacattatccaatcccttatcttagc 978
Query: 121 cttattcggcakatacactctctagaagttgccctttkcctttccaatatgacaaggaat 180
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 977 cttattcggcagatacactctctagaagttgccctttgcctttccaatatgacaaggaat 918
Query: 181 ccattcatggcagaggatgaagagcctccagtgatacgttctccacaacgggctgctatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ccattcatggcagaggatgaagagcctccagtgatacgttctccacaacgggctgctatg 858
Query: 241 agagctagtcagtatagttacagtgctgtttcatacgatgatgatgccagtcgttttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 agagctagtcagtatagttacagtgctgtttcatacgatgatgatgccagtcgttttcaa 798
Query: 301 ggttttccagcagttgatagttatccatcatcaccttcaaaagctgctgccagatactca 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggttttccagcagttgatagtaatccatcatcaccttcaaaagctgctgccagatactca 738
Query: 361 cctcagaaaatgaataatacccttatcgatagtktgcacaattccccactgccacgaaac 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 737 cctcagaaaatgaataatacccttatcgatagtgtgcacaattccccactgccacgaaac 678
Query: 421 aggtaccaagccaatttgcaagcctctccaagaagaatgaatcatgcactcattgacgtt 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 677 aggtaccaagccaatttgcaagaatctccaagaagaatgaatcatgcactcattgacgtt 618
Query: 481 kaaagchatkatkktkakagtttktatkacatatacaccaacagtyctactaaaccaggt 540
||||| || || | | ||||| ||| ||||||||||||||||| ||||||||||||||
Sbjct: 617 gaaagcaatgatggtgagagtttgtatgacatatacaccaacagtcctactaaaccaggt 558
Query: 541 cctttattccaaagactaacctcaaatgagacagaatacacgtatgatagca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cctttattccaaagactaacctcaaatgagacagaatacacgtatgatagca 506
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3826
Number of Sequences: 1807
Number of extensions: 3826
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 594
length of database: 10,358,551
effective HSP length: 16
effective length of query: 578
effective length of database: 10,329,639
effective search space: 5970531342
effective search space used: 5970531342
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.4 bits)